Source notes · Working collection · Snapshot 14 September 2026

Coverage and boundaries of the hypothesis collection

Reviewed 14 September 2026. Index · Probability method.

This is a broad, mechanism-oriented literature assessment of diabetes-related structural injury or failed replacement of human peptidergic C-fiber terminals. Other neuropathies serve as calibration examples. It includes 45 causal propositions and 210 conditional claims. The propositions overlap and do not constitute a census of every molecular regulator.

The assessment uses primary papers, public source data, trial records and the repository's scientific topic histories. Searches combine diabetes/diabetic neuropathy with a mechanism or alias and with sensory neuron, DRG, Schwann cell, axon, skin denervation or intraepidermal fiber density. Detailed checks address human dose, independent sample counts, structural outcomes, interventions, retractions and duplicated reports. The collection-wide review also checked shared evidence, the highest and lowest estimates, and every conditional table against its resolving comparisons.

This was not a database-complete systematic review with a screened denominator. A family absent here has not been proved absent from the literature. The retrieved primary studies support the coverage stated below; a paper mentioning a pathway is not automatically evidence that it damages this fiber class. No claim is made that every citation was available in full text. Local public-data reanalyses are identified as such.

Operational scope

The main question is physical preservation in initially DPN-free early T2D. The files define their finite candidate groups, molecular alternatives, exposure thresholds and interventions. A negative result for one of these bounded questions does not reject every process sharing its name.

Seven notes have population or endpoint exceptions: 13 uses secretion-deficient T1D; 35 uses six-month injury after rapid correction; 37 uses prolonged metformin exposure; 38 uses advanced CKD; 40 uses sustained glycemic improvement; 41 uses substantial verified lows under any treatment; and 44 uses established-DPN repair. The new/progressive denominators in 37, 38, 40 and 41, and the population-coverage denominator in 44, are not early-T2 incident-case coverage.

The intervention definitions also matter. Hypothesis 08 prices the saturated-fatty-acid input to mitochondrial-voltage route, not every lipid effect. Hypothesis 20 prices dead-material clearance, not every macrophage benefit. Hypothesis 24 prices post-enclosure disposal completion, not all autophagy initiation. Hypothesis 39 uses a finite reactive-chemistry panel; 43 uses specified physiological lipid profiles with compositional displacement. Related routes outside those interventions remain unpriced.

Every note gives a best probability and scenario-sensitivity range for every row and the whole proposition. The index has the current numbers. Their breadth reflects missing measurements and uncertain transfer, rather than a fitted probability distribution.

What is grouped together

A separate file is useful when the hypothesis introduces a different exposure, necessary compartment transfer, limiting function, execution mechanism or loss-versus-replacement explanation. Several proteins governing the same causal requirement remain branches inside that file. A file can be broader than one experimentally resolved molecular pathway; its probability then prices that broader union.

Literature term or related family Where it belongs Distinction retained
Aldose reductase, sorbitol, SORD, myo-inositol, polyol-associated redox changes 01 Elevated flux, poor disposal and a toxic consequence are separate claims
Glucosamine, hexosamine biosynthesis, O-GlcNAc 02 The priced exposure is free D-glucosamine; the entire hexosamine pathway is not separately priced
Glycated matrix/laminin/collagen, AGE receptors, reactive carbonyls 03, 04, 05 Matrix effects, receptor signaling and direct chemical injury can differ
Glucose oxidation, respiratory reserve, AMPK/PGC-1, NAD balance 06, 07, 27, 28 A narrow overload model is distinct from energy shortage and specific NAD-consuming executors
Palmitate, oleate, acylcarnitines, lipid droplets, oxidized LDL 08, 09, 17 Mixture, unbound exposure and neuronal versus glial routing matter
Serine/alanine balance, PHGDH, SPT, deoxysphingolipids 10 Human inherited toxicity supports capability, not the diabetic exposure bridge
Canonical ceramide species, sphingolipid balance, beneficial fatty-acid products 11, 43 Toxic accumulation differs from a limiting protective product
Insulin/IGF, C-peptide, NGF/TrkA, PTEN and muscarinic growth control 12, 13, 14, 44 Deficiency, resistance, adult dependence and growth restraint differ
Capillary dysfunction, hypoxia, nitric-oxide availability, DAG/PKC, nerve-barrier changes 15, 16 Structural vessel abnormalities need a consequential delivery deficit
Remak-cell support, Schwann mitochondrial/lipid metabolism, satellite glia, organelle transfer 17, 18 C-fibers are unmyelinated; supportive glia still matter
TNF/TLR/NF-kappaB, inflammatory cytokines, protective macrophages, complement 19, 20, 22 Immune activation has no universal harmful sign
NLRP3, gasdermin, TBK1-associated pyroptosis 21 The priced sequence requires conducting gasdermin pores; lysis is not obligatory
UPR/CHOP, integrated stress signaling, proteostasis, autophagy/lysosomes, mitophagy 23, 24 Sensor-specific excess and post-enclosure disposal completion are distinct from generic stress or LC3 abundance
DRP1/MFN/OPA1, mitochondrial fragmentation, transport, HDAC6/tubulin 25, 26 Complete remodeling events and route-specific cargo balance differ from morphology or motion alone
SARM1/NMNAT2, PARP, GPX4/iron-dependent lipid injury, caspase-associated soma death 27–30 Catalytic SARM1, excess PARP1, iron-dependent irreversible membrane injury and completed somal apoptosis have different truth conditions
Sodium/calcium channels, calcium handling, ion-pump demand 31 Excess excitability must cross a structural injury threshold
Keratinocytes, terminal niche, repair factors, senescence/SASP 32, 33 Finite extracellular or secreted panels are priced; gross entry, retention and total net preservation remain separate
Microbiome, endotoxin, short-chain fatty acids and other microbial products 34 Transferable community effects do not identify one mediator
Treatment-induced neuropathy, rapid HbA1c reduction, severe lows, glucose variability 35, 41, 42 Rate of improvement, absolute fuel deprivation and waveform shape differ
Nerve swelling, entrapment, repetitive mechanical stress 36 A focal lesion is not automatically the cause of symmetric distal DPN
Metformin-associated B12 deficiency, renal failure/uremic exposure 37, 38 These use explicit treatment/comorbidity populations
ROS/RNS, peroxynitrite, antioxidant buffering 39 Damaging chemistry does not require one mitochondrial source
Metabolic memory, chromatin persistence, lasting exposure effects 40 Persistent causal regulation differs from irreversible old damage
hIAPP/amylin oligomers and amyloid-related peptide toxicity 45 The intervention removes specified mature hIAPP assemblies locally while preserving free hormone and systemic exposure

Aliases in this table locate a family. They do not confer a separately assessed probability on every named protein, lipid or process.

Evidence deliberately kept outside a direct C-fiber claim

Myelin-specific injury. The MLKL diabetic-mouse study has strong manipulations of myelin decompaction and conduction. Its S441-linked myelin function is distinguished from canonical RIP3-dependent necroptotic phosphorylation. It cannot be copied directly into a claim that unmyelinated C-fibers die by necroptosis. A Remak-cell/support consequence would need the bridge in hypothesis 17; a distinct C-fiber necroptosis price is not justified by that myelin experiment. Primary study.

CNS and pain-only mechanisms. Spinal microglial activation, central sensitization or altered withdrawal behavior can change pain without preserving a peripheral axon. Conversely, a central intervention could conceivably influence peripheral maintenance; that return path must be demonstrated rather than assumed. The TBK1 study's central knockdown and systemic treatment had different structural results, as discussed in 21. The reported diabetes-associated dimethylglyoxal study concerns blood-brain barrier/cognitive outcomes; it does not supply a separate peripheral-fiber cause here. Primary CNS study.

New cell-death labels or regulator lists. A ferroptosis file is included because that specific injury claim has a retrievable experimental nerve literature, but it receives a low price for the human bridge. Cuproptosis, disulfidptosis and a broad “necroptosis” label are not assigned separate human C-fiber probabilities merely from review terminology or marker enrichment. This is a limitation of the assessed evidence, not a declaration that these processes cannot occur. Likewise, miRNAs, lncRNAs and individual kinase targets are grouped by the function their manipulation is proposed to change.

Other causes of neuropathy. Alcohol, chemotherapy, infections, autoimmune disease, inherited neuropathies and nutritional deficiencies unrelated to diabetes are not added as extra diabetes mechanisms. When they establish a useful causal capability, that narrower inference is stated locally. Foot-ulcer trauma is also not treated as an explanation of the earlier transition to incident DPN.

Calibration examples and the inference they buy

Example Useful inference Remaining gap
SORD-associated inherited axonal neuropathy Severe polyol-disposal failure can injure human nerves Ordinary diabetic exposure; predominantly motor inherited phenotype
HSAN1/deoxysphingolipid disease The lipid chemistry can damage human sensory nerves Concentration, duration and prevalence in type 2 diabetes
Human sensory-neuron SARM1 perturbation under other injuries Human axons possess the execution route Activation during diabetes and mature fiber subtype
Amyloid polyneuropathy and precursor suppression A circulating amyloid precursor can causally affect human neuropathy Amylin is a different precursor with a different local exposure
Nondiabetic advanced CKD with skin denervation A renal-disease state can accompany human small-fiber loss independently of diabetes Which exposure is causal and how much it contributes in diabetic CKD
Human randomized DPN intervention results Challenge an unqualified culture/animal-to-human efficacy inference A drug trial may not test the exact mediator, stage or structural endpoint

These are selected anchors, not a denominator from which an empirical animal-to-human success rate can be computed. Primary citations and sample-size qualifications are in the linked mechanism files and the method.

What this says about prevention

The collection identifies many physically plausible routes and makes their weak links explicit. It does not identify a uniquely proven cause in an individually typed human peptidergic neuron. The strongest confidence often concerns a general capability—energy failure, oxidative injury or axon execution—while the largest uncertainty concerns whether a specific diabetic exposure engages that capability, at the right place and time, enough to account for material human loss.

That separation is the intended use of the prices: decide which missing human bridge carries the uncertainty, rather than mistake a long molecular pathway or an attractive rescue for a completed causal explanation.

How to cite this

Edelman, Brice, and Jeffrey Skolnick (2026). “Coverage and boundaries of the hypothesis collection (with GPT-6).” Diabetic Peripheral Neuropathy Mechanism Explorer. Snapshot 14 September 2026. Page permalink.

Include your access date when citing this evolving resource. BibTeX for the collection. For a study’s findings, also cite the original paper linked in the report.